Sentence examples for based on their secondary from inspiring English sources

In this paper we have presented a one-class approach to predicting miRNAs based on their secondary structure and sequence features from other studies using information only from the positive (miRNA) class.

Qualitatively, the read-based clusters closely resemble the results of clustering known and predicted ncRNAs based on their secondary structure (Kaczkowski et al., 2009; Will et al., 2007).

tRNA genes were identified using tRNAscan-SE and ARWEN based on their secondary structures (Fig. S4 29,30.

Mireap (http://sourceforge.net/projects/mireap) was used to predict novel miRNA candidates based on their secondary structure, stability of their hairpin structure and the Dicer cleavage site of the miRNA tags.

Transfer RNA genes were aligned based on their secondary structure.

Here three steps are followed: (i) RNA sequences are selected based on their secondary structure.

The mt trns were aligned manually based on their putative secondary structures.

The SSU rDNA sequences were aligned based on their RNA secondary structure with DCSE [see Additional file 8].

Moreover, this platform evaluates all candidates based on their RNA secondary structure and AT content, allowing users to choose better candidates.

All tRNA genes were identified using tRNAscan-SE web server [ http://lowelab.ucsc.edu/tRNAscan-SE/, [ 27]] under default settings and source = "mito/chloroplast", or by hand based on their potential secondary structures and anticodon sequences.

Mitochondrial tRNA gene nucleotide sequences were aligned manually based on their putative secondary structure, whereas mt ribosomal RNA (rRNA) gene nucleotide sequences were aligned with MAFFT L-INS-i [ 55] and corrected by eye for any obvious misalignment.