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The individuals with interrupted premutations should be unaffected based on their repeat length alone, but this was the case only in one male with 37 interrupted repeats [ 105].
Pattern optimization has considered complete repeat, when the length of pattern repeat was increasing the size of patterns changed based on their repeat.
Over 4500 loci were identified that contained repeats and these were ranked based on their repeat fidelity within each locus, in order to identify a subset of loci with conserved repeat motifs.
Six of the CRISPR-like arrays identified from DSS dataset were assigned to Metallosphaera sedula based on their repeat sequence.
Based on their repeat unit lengths, tandem repeats are broadly classified into three categories: microsatellites (1 6 nucleotides); minisatellites (7 100 nucleotides); and satellites (>100 nucleotides).
It would be thus interesting to understand the functional relevance of such designed TFFDMS markers based on their repeat expansion/contraction in the functional domain regions of TF genes for trait association analysis in chickpea.
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Of the more than 20 VNTR loci that originally were identified by the in silico analysis 10 were selected based on their characteristics (repeat size, number of repeats, unique locus).
To summarize these data genome-wide, TR loci of the same motif size (e.g., dinucleotide repeats) were binned based on their modal repeat number, and for each such bin, the proportion of polymorphic loci was computed as the proportion of TRs containing an indel with an allele frequency ≥5% (see Materials and Methods).
15 CRISPR were found and classified as two distinct loci (designated CRISPR1 and CRISPR2) based on their typical repeat sequences.
Whereas these are not evident in the respective oldest subfamilies, SVA_A and LAVA_A, from the B subfamilies onwards the two families can be clearly distinguished based on their VNTR repeat unit content and organization.
In the SHP metagenome, 1711 CRISPR-like arrays (comprising 15130 spacers) were identified, of which 123 were assigned to specific microbes (based on their unique repeat sequences; Additional file 1: Table S6).
More suggestions(15)
based on their lack
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based on their year
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based on their complexity
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