For visualizing the results I placed species pairs into 'bins' based on their phylogenetic distance from one another.
There are two distinct clusters among the ascomycetous fungi, which appear to be lineages of two ancestral fused proteins based on their phylogenetic distance; of these, one clusters more closely with the P. chrysosporium fusion proteins.
But, as compared to GC-FAME, the 16S r RNA-based strain identification is more popular and practiced technique as it is molecular biology-based technique, and leads to accurate species differentiation of species based on their phylogenetic analysis.
Twenty-one conserved miRNA families were clustered into three groups based on their phylogenetic distributions.
Comparisons between Psg and other P. syringae genomes were also performed by adding one more genome at a time and until all nine genomes, based on their phylogenetic relationship and the number of conserved genes (in order) (Fig.4, Figs. 7AC and S3AC).
Based on their phylogenetic position, it is thus inferred that the two groups inherited this trait from their common ancestor and passed it down in both lineages.
GCRV, belonging to the genus Aquareovirus of the family Reoviridae, has been classified into three genotypes based on their phylogenetic relationship.
A total of 70 SmbZIP transcription factors were identified and categorized into 11 subgroups based on their phylogenetic relationships with those in Arabidopsis.
Functionally characterized ROs have been categorized into five different similarity classes (A, B, C, D and D*) based on their phylogenetic distribution, substrate preferences and mode of attack on aromatic nuclei (Chakraborty et al. 2012).
Based on their phylogenetic diversity and ecological distribution, Acidobacteria are expected to represent a metabolically and genetically diverse group comparable to other well known phyla and are currently found in soils, freshwater habitats, hot springs, wastewaters and others [Quaiser et al. 2003].
Most modern progressive methods modify their scoring function with a secondary weighting function that assigns scaling factors to individual members of the query set in a nonlinear fashion based on their phylogenetic distance from their nearest neighbors.
