Given this difficulty and the purpose of this study, to examine whether different computational methods would generate consistent results on expression conservation, the performances of Liao and Zhang's method, Dutilh et al.'s method, ICC and Essien et al.'s method were evaluated based on their pair-wise agreements.
Figure 4a shows a neighbour joining distance tree of cacti based on their pair-wise Euclidean distances.
To explore the interrelationships between the genes involved in regulating the ionome we constructed networks of genes based on their pair-wise physical and genetic interactions.
First, we clustered the network by using the average method of hierarchical clustering based on their pair-wise partial correlation coefficients, resulting in a cluster tree including six disease groups.
First, we clustered the network by using the average method of hierarchical clustering based on their pair-wise partial correlation coefficients in which non-significant coefficients were set to be zero.
The alignment was refined by comparing the sequences with their next relatives from the ARB database based on their pairing across a helix using secondary structure models as implemented in ARB.
Thus, we considered that measuring the positions of tRNA genes based on their base pair distances from the 3' end of the CR is justified.
She began making small etchings, which he could not see because of his farsightedness, and began her illustrations based on their relationship: a pair named Cutie and Bullie that became central to her work.
To group tissues based on their tissue TF pairs, a 2549 (tissue TF pairs) × 79 (tissues) matrix with binary numbers was first built for all tissue TF pairs in the 79 human tissues.
The similar article pairs were categorized into two groups based on their authors: 1) pairs with shared authors (in which both articles share at least one common author) and 2) pairs with no shared authors (the pair of articles do not share any authors).
Reads from repetitive regions that could not be unambiguously placed based on their sequence or pairing information were randomly distributed between the copies of the repeat.
