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Cis-NAT pairs can be classified into three groups based on their overlapping patterns, including 3' end overlap, 5' end overlap and one entirely contained within the other [ 49].
The classification of cis-NAT pairs based on their overlapping patterns was shown in Table 4.
Starting with lists of House committee members in the 102nd through the 107th Congress (1989-2004), applied mathematician Mason Porter of the Georgia Institute of Technology in Atlanta and colleagues used a technique called network analysis to map the arrangement and strength of the connections between committees based on their overlapping members.
Based on their overlapping gene structure and transcriptional initiation and termination sites, we subsequently cloned promoters of miR-433 and miR-127.
ESTs were clustered based on their overlapping matching positions on the genome.
We then compared the reads within each subject by nucleic acid type to reassemble CRISPR loci based on their overlapping adjacent spacers.
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In the first phase of the proposed algorithm, the reads are grouped into groups G i, i∈{1,…, p} and p≤ n basing on their overlapping information.
These sequences were annotated based on their overlap with publicly available genome annotations (Table S1) and a total of 472 known miRNAs were identified with a greater total number of miRNAs expressed in the normal donor group than in the patient group (Fig. 2A).
This is achieved through a 'landscape-species approach' (sensu [3]), which maps spatially-explicit ecological requirements for a suite of conservation targets ('landscape species') and, based on their overlap with human land uses, identifies key threats to be addressed by conservation action [3], [34], [35].
Therefore, we think that it is more reasonable to apply the method (A, B, and C) to each cohort and then reconcile the candidate genes from the three cohorts to reach a final list of prognostic genes based on their overlaps among any two cohorts and concordant expression across the three cohorts.
Resulting intersection file validates a minimum of 147 TSS sites based on their overlap.
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