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We have found that each of the three independent isolates of the four commercially-produced wine strains we examined (i.e., 12 strains total) are all S. cerevisiae strains, based on their array karyotypes showing that all have genomes highly similar to the standard laboratory S. cerevisiae strain (S288C).
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These nineteen transcription factors were chosen for further study on Array Format 2 based on their results in Array Format 1, i.e., they all had significantly increased expression at the dry seed stage compared to the reference.
The detection and survival data presented in Tables 2 and 3 respectively, are the corrected number of fish that were assumed to have passed the NSOG array, based on their subsequent detection on the QCS array.
We selected 10 genes for validation based on their performance on the array.
The authors found that for those genetically FSHD1 subjects carrying 7 to 10 RUs at their shortest FSHD-permissive allele, affected subjects have significantly less DNA methylation than predicted based on their 4q and 10q D4Z4 array sizes, while asymptomatic subjects do not.
Additional mapping of some genes on the BmV2 array into the KEGG pathway was done based on their annotations on the BmV2 array.
We excluded two outlier arrays based on their high mean gene expression levels and then using the remaining 162 arrays we filtered for genes whose mean expression was in the upper 50% and whose variance was in the upper 66%.
We are currently designing an application that will automate the SNP selection process so users can build customized 96 or 384-SNPs arrays based on their lines of interest and preferred SNP density across the genome.
Based on their abovementioned characteristics, microbial cell arrays have been used in diverse applications for monitoring the global effects of test samples, as shown briefly in Table 1.
To examine if the differences in methylation between donor and recipients represent differences in the underlying proportion of blood cell types within the sample, we ranked the loci on the arrays based on their prior association with blood leukocyte methylation [ 38, 39] which has defined blood cell specific differentially methylated regions.
Learners input the array order based on their hypothesis in 4a.
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