Sentence examples for based on their annotated from inspiring English sources
The specific physical location of class I GNMS markers designed from the promoters, 5'UTRs, introns and 3'UTRs of rice genes was determined based on their annotated physical positions (bp) on the rice chromosomes provided in the latest released TIGR rice pseudomolecule 5.0 database.
The probes, probesets and transcript clusters from these files annotated as targeting core human transcripts (i.e. non Affymetrix control probes) were combined, based on their annotated genomic coordinates, to create a mapping table with a three tier hierarchy where probes belong to probesets that in turn belong to transcript clusters (mapping table available on request).
Genes have been clustered together, manually, based on their annotated function in the Saccharomyces Genome Database (SGD).
Genes found to be significantly differentially expressed in wild type sporozoites compared to mixed blood stages were placed into functional categories based on their annotated functions.
Another 267 polypeptides, where no EC number was supplied, were matched to reactions based on their annotated name.
The differentially expressed genes were classified into groups based on their annotated functions using the BGSSJ software tool [ 63].
Sequences for the different EULs were mapped on the chromosomes based on their start position and annotated with their locus number.
The significant MPSS and SBS signatures from all five libraries were classified into seven classes based on their location on the annotated genes according to the method previously described by Meyers et al. [ 45] (Additional File 2).
Candidate genes within major QTL were identified in BLASTn searches based on their similarity to genes annotated and reported in the literature as having roles which could influence the levels of secondary metabolites (see Supplementary Information).
These sequences were annotated based on their overlap with publicly available genome annotations (Table S1) and a total of 472 known miRNAs were identified with a greater total number of miRNAs expressed in the normal donor group than in the patient group (Fig. 2A).
