Sentence examples for based on their alignment from inspiring English sources

The POTRA domains for conserved BamA proteins with five POTRA domains were predicted based on their alignment to the sequence A1KRL4_NEIMF, which was aligned with, and the POTRA domains defined based on, the BamA Neisseria gonorrhoeae structure (Noinaj et al. 2013); the alignment with structural information was obtained through phyre2.

Potential board members would self-select or be asked to join based on their alignment with the pact.

From a total of 195 probe sets, 176 could be mapped to the sorghum genome based on their alignment with a sorghum gene ("Materials and methods").

Contigs were ordered and oriented based on their alignment to the reference genome C. difficile 630 using NUCMER.

The reads from these SAM files were then separated based on their alignment to the forward or reverse strand.

SNP patterns in the genes shared by all 18 genomes were analysed based on their alignment in MAUVE.

The potential transcripts that are derived from more than one exon (based on their alignments with the Musa genome) or from a single exon but having a BLAST hit to known protein(s) at the cutoff E-value 1e-5 were considered to be more likely transcribed from genuine genes and are reported as novel banana transcripts in this study.

We used the metagenome analysis program MEGAN (Huson et al., 2011) to assign reads to KEGG orthology (KO) groups based on their alignments.

For plant species with complete genome information, conserved and novel miRNAs can be conveniently identified based on their alignments to the genome and known miRNAs in the miRBase and analysis of their pre-miRNA stem-loop structures.

The accuracy of marker positions in the genome is reflected by the order of scaffolds on the chromosomes as scaffolds were placed on chromosomes based on their alignments to markers.

In this species, great use was made of sheep BAC-end sequences (BES), which were assembled in a consensus manner based on their alignments to cattle, human and dog sequence assemblies.