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We computed the p-values for each weight value by 10000 permutations, by permuting the sample labels based on the permutation events.
There were a few other pairs with only one homozygous group deviating from the null distribution (p-values <0.05) based on the permutation tests, and the signal was not as strong.
This algorithm is based on the permutation representation of solutions.
(2010a), which is based on the permutation level of operations to obtain the distance between two solutions.
The LOD thresholds based on the permutation test were very high because we used the F2 generations for QTL analysis.
The variable selection criteria as well as the splitting procedure are based on the permutation test framework developed by Strasser and Weber (1999).
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The experimental section was designed according to a factorial design of fixed effects and the analysis based on the Permutations Test for an Analysis of Variance Design.
The Ranking Metric based on the permutations is displayed in Fig. 4, where the first column is the victimisation rate ranking, (V^{(1)}), with the counties that suffer the higher rates in the upper part, and the second column displays the perception of security ranking, S, with the counties perceived as the least secure in the upper part.
Therefore, we calculate the false discovery rate (FDR) based on the permutations using a similar method introduced in GSEA [35].
The empirical null distribution of test statistics in the GRS-based association analysis was then estimated based on the 1000 permutation results.
The data reconstruction is based on the random permutation of the separated wavelet coefficients for the two categories.
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