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Collectively, at least 18% of AtWRKY (11 of 61), up to 64% (39 of 61) or more, were jasmonate responsive WRKYs based on the microarrays analyzed.
We knocked down expression of 14 of these genes, seven of which were predicted to be upregulated and seven downregulated during regeneration based on the microarrays.
An unbiased approach based on the microarrays from the human PBMCs transduced with the HLA-B*35 carrying lentivirus revealed a number of genes modulated in response to HLA-B*35.
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This observation has the major implication that on the basis of the qRT-PCR data that we obtained, it is generally not feasible to predict the true expression level of one gene based on the microarray expression score of another.
Based on the microarray-based network, 98 genes were associated with prostate cancer, and based on text mining, 133 genes were associated with prostate cancer; 34 of them were identified with both procedures.
Based on the microarray results from the twelve, one-hour time points, the authors fit a spline model to estimate transcript levels throughout the cell cycle in higher resolution [ 14].
Compared to the method based on the microarray manufacturer's recommendations, WTA-based expression profiling generated less than 2% false positive and 9% false negative measurements respectively (Figure 2F).
We construct a gene transcription network based on the microarray expression level.
Based on the microarray and a pathway analysis, we hypothesize that PEGylation inhibited the endosomal escape of NP, and extended the interaction of toll-like receptor-9 (TLR9) with CpG-DNA accompanied by the production of type I IFN.
Selection of the reference genes was based on the microarray results using an algorithm described in Popovici et al. (2009).
Because the gene expression patterns are different in different cell lines (Fig. 1), we analyzed the mRNA levels of different ISG candidates in different cell lines based on the microarray results.
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