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For example, it could be a complex task for users to determine the optimal number of clusters and obtain meaningful partitions solely based on the dendrogram shown in Figure 2. The k-means method is perhaps one of the simplest, best known clustering techniques.
Based on the dendrogram, protein expression changes at stage I were distinct from those observed at stages II and III, and changes in 18R and B73 were very comparable at each stage (Fig. 4).
Based on the dendrogram, morphological and biochemical characteristics, OP1 showed 91% homology with Bacillus thuringiensis strain IAM 120177 and as a result was tentatively identified as B. thuringiensis.
We employed hierarchical clustering with Ward's method of average linkage [ 59] and clustered the treatments into 5 distinct groups based on the dendrogram.
The rows were clustered based on the dendrogram being two units apart; such distance being determined by the hierarchal clustering method.
To reveal the degree of association between the Self-Organizing Map units, the Ward linkage method was used to cluster the movement data based on the dendrogram according to the Euclidean distance [ 36, 37].
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The 43 upland rice genotypes clustered into five groups based on the dendrograms of cluster analysis and PCA.
Based on the eigengene dendrogram (Fig. 2c), the MEbrown and MEgreenyellow modules had very similar expression profiles, indicating that their genes were highly co-expressed; thus, these modules were merged and renamed as cluster 1 (C1).
Based on the interaction dendrogram, a strong synergistic effect was observed between MRC-1 rs691005 and IL-28B rs8099917.
Even though the viscosity of the BXX samples cannot be determined by GC, samples were assigned to viscosity groups based on the HCA dendrogram mixture.
Filtered transcriptomic data was clustered using hierarchical clustering (Euclidean distance, complete linkage) and divided into clusters based on the resulting dendrogram.
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