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A significant association of MSI and CDK1SA-based risk stratification was apparent, based on the cutoff for CDK1SA of 11 (maU eU 1).
Based on the cutoff concentrations used, only one isolate carried no mutation in gyrA or gyrB and showed susceptibility to gatifloxacin and resistance to ofloxacin and moxifloxacin.
The first task was the assignment of each molecule to one class, namely 'actives' or 'inactives' based on the cutoff value (EC50 = 0.51 μM) of the reference compound.
Mutation Cutoff Scanning Matrix (mCSM) (43) (http://structure.bioc.cam.ac.uk/mcsm) is based on the cutoff scanning matrix (CSM) concept and relies on graph-based structural signatures (50, 51).
Specific code matrices are constructed and optimized based on the cutoff rate.
Table 3 Richness and diversity estimates for bacterial and archaeal 16S rRNA and SDIMO gene clone libraries from both P and Np Soil samples (sequence classification based on the cutoff value determined by DOTUR).
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Therefore, the cutoffs that divide genes with atypical BLAST hit distribution from typical ones can be set accordingly and HGT events can be predicted based on the cutoffs.
Definition of BMI was based on the cutoffs proposed by Cole and colleagues [ 16].
Based on the cutoffs, the program reports a population of genes with an atypical, non-vertical history, which in the context of the a priori provided phylogenetic information represents a putative horizontal history.
Converged results were obtained based on the energy cutoff of 150 Ry.
Sensitivity, specificity, and likelihood ratios were calculated based on the best cutoff points of the ROC curves.
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