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A maximum-likelihood (ML) phylogeny based on the concatenated 2851 genes was generated with the program RAxML [ 83].
Interestingly, the topology of the phylogeny based on the concatenated CDSs generally reflects differences of TE content in the region examined.
We also applied this cutoff when comparing the MCMC trees based on the individual data sets and that based on the concatenated data.
As in the original analysis [ 32], support for backbone branches is effectively unambiguous based on the concatenated data, and the outgroup-inferred root is placed between Osmundastrum and the remainder of the family, resolving the traditional genus Osmunda (Osmunda s.l).l
Thus, the cydABX operon might be considered as one evolutionary unit, and a phylogeny could be constructed based on the concatenated sequences of all three proteins.
The structures of the novel super forward error correction (Super-FEC) code type based on the concatenated code for high-speed long-haul optical communication systems are studied in this paper.
aThe LLDC method based on the concatenated representations from LSC-sift and LSC-ldv.
fThe LDC method based on the concatenated representations from LLC-sift and LLC-dv.
bThe LDC method based on the concatenated representations from LSC-sift and LSC-dv.
Our tree that is based on the concatenated sequences of 7 housekeeping fragments is very similar to the original tree.
A neighbour-joining tree based on the concatenated MLST data of all the carriage and infection isolates is given in Figure 6.
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