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For DNA methylation data using Illumina HumanMethylation450 BeadChip (450 k array), probes annotated as "promoter_associated" (based on the annotations of IlluminaHumanMethylation450k.db [ 32]) were selected (if a gene has multiple promoter associated probes, only one of them was chosen).
While reference-based profiles called the presence of Pfam domains based on the annotations of characterized proteins, they could be directly detected in assemblies through profile alignment, thus capturing novel sequence diversity.
Based on the annotations for the human reference genome sequence, we annotated the dynamic positions in the genome sequences of the three pre-defined Chinese populations to coding regions, intergenic regions, introns, and untranslated regions (UTRs).
Jigsaw developed its toxicity scores based on the annotations.
Finally, for the classification, we propose the use of a deep learning classifier, which is pre-trained with a regression to hand-crafted feature values and fine-tuned based on the annotations of the breast mass classification dataset.
Based on the annotations, an algorithm automatically segmented the image and extracted all features resulting in one set of features for each reader.
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Based on the annotation analysis, one or several different transcripts from 16644 ferret genes were represented on the array.
In addition, the study's first and second authors, who were never in contact with participants and blind to diagnoses, annotated all participants' narrations based on the annotation scheme described below.
Of these, one or several BPs were assigned to 633 (74%), based on the annotation of their constituent proteins (Supplementary Data 2).
Based on the annotation of IRGSP, SNPs and InDels, SNPs were classified as genic or intergenic.
Based on the annotation, the genes related to stresses were selected for selection of cold-stress candidate genes.
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