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We show that the eigensystem approach based on the adjusted adjacency matrix is not only effective but also more efficient than that based on the adjacency matrix.
As a result, HCF-COMs of the full-sized and downsampled images, the two-dimensional COM based on the adjacency histogram, are unchanged by the hidden data.
Matrix diagrams 80, 81 are based on the adjacency matrix of a given graph.
A bipartite M-P network of molecules and pathways can be constructed based on the adjacency matrix.
For each pair of genes, a robust measure of network interconnectedness (topological overlap measure) was calculated based on the adjacency matrix.
The topological overlap measure (TOM), which assess the degree of shared neighbors between pairs of genes, was calculated based on the adjacency matrix and was used as input for the gene dendrogram (1-TOM).
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Examples of weighted adjacency graphs are shown in Figure 3. Based on the weighted adjacency graph, in [ 12] a family-free DCJ similarity measure has been proposed.
Based on the network adjacency matrix, we define the following dissimilarity measure between the samples: dissA= 1-adjacency.
We generated simulated disease outbreaks that spread based on the zip code adjacency graph with additional edges added to simulate travel patterns and injected these outbreaks into real-world hospital data.
Based on the results of the adjacency matrix, the topological overlap was calculated to measure the network connections of gene pairs.
Our new approach for whole-genome data, based on the sampling of adjacencies, matches the classical bootstrap and parsimony jackknife approaches and thus provides the first reliable method for assessing the quality of phylogenetic reconstruction from such data.
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