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We developed a distributed genome assembler based on string graphs and MapReduce framework, known as the CloudBrush.
In addition, we integrated the EA algorithm into a distributed assembly program [ 15] based on string graphs and MapReduce cloud computing framework [ 16, 17], known as CloudBrush.
Chang et al. [ 43] have developed a distributed genome assembler based on string graphs and the MapReduce framework, known as the CloudBrush.
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The proposed solution is based on string comparison operation.
The extraction of the relevant abstracts based on string matching can not capture the underlying semantics.
After building the assembly graphs, algorithms based on de Bruijn graphs or string graphs manipulate the graph-theoretic models by using several operations of graph simplification to repair erroneous reads and to remove redundancy in graphs, such as removing short dead-end tips and bubbles of similar paths [ 2].
STRING identifies and visualizes functional networks based on known and predicted protein-protein interactions [ 24].
In this paper, we call graphs based on graph theory "network graphs".
Based on appropriate string encodings of graphs, bounds to estimate the Kolmogorov-complexity of labeled and unlabeled graphs were obtained in [32].
Their formulation is based on graphs that they termed interval-adjacency graphs.
actor) model of computation based on event graphs.
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