Sentence examples for based on spoligotypes obtained from inspiring English sources

We drew a minimum spanning tree (MST) based on spoligotypes obtained in our studys.

Highly similar groupings of the isolates were observed when a dendrogram was built based on spoligotypes alone or on a combination of VNTR and spoligotypes, although the resolution was lower when spoligotyping was used alone (data not shown).

SPOTCLUST uses mixture models based on spoligotypes to identify strain families of MTBC.

Therefore, while it has been established that strains of TB belong to distinct sublineages, the definitions of these sublineages based on spoligotypes are not clear.

The overall goal of this paper is to construct a model for predicting clades based on spoligotypes as determined by SITVIT using published rules from SPOLDB4 and other sources and to make this model available via the World Wide Web.

In all cases, the choice of the treatment based on spoligotyping was not changed after culture and susceptibility test results were obtained.

tuberculosis and one M. bovis Samples based on spoligotyping results using Unweighted Pair Group Method with Arithmetic mean (UPGMA).

For isolates that could not be reliably classified as M. tuberculosis or M. africanum based on spoligotype analysis alone, the presence or absence of lineage defining large sequence polymorphisms RD702 and TbD1 was assessed, as previously described [30].

Genotypes based on spoligotyping in accordance with classification by Brudey et al. (10 ).

Phylogenetic relationships were inferred by comparing two methods: a "cluster-graph" method based on spoligotyping results, and a minimum spanning tree method based on both spoligotyping and variable number of tandem DNA repeats (VNTR).

Well-defined TB sublineages based on spoligotype and MIRU are critical for both TB control and TB research.