Sentence examples for based on spectral counts from inspiring English sources
PDCD4 is one of the phosphoproteins that appeared to be induced by CXCL12 stimulation based on spectral counts (Figure 5A and Table 2).
More recently, we implemented Significance Analysis of INTeractome (SAINT) within ProHits to provide scoring of interactions based on spectral counts.
For each site, phosphorylation levels were based on spectral counts [38].
dNSAFs were calculated based on distributed spectral counts, in which shared spectral counts were distributed based on spectral counts unique to each isoform.
To increase the stringency of our analysis, the Rab proteins were semi-quantitatively profiled based on spectral counts [41] over the entire Nycodenz density gradient separating the post-nuclear fraction of a rat liver homogenate.
Looking for negative correlations between miRNA level and protein expression based on spectral counts, we found that a higher number of miRNAs, 114 (97.4%) had a direct target protein identified (Table S2).
Based on spectral count, the bait protein was usually the most highly identified protein in each control-subtracted sample, evidence for the efficacy of the pulldown.
Statistical analysis was based on spectral count [52], however the normalization procedure was specific to in-gel and in-liquid digested samples.
In our study we also observed a good correlation between estimates of abundance of tissue inhibitor of metalloproteinase 1 (TIMP1) and epithelial cadherin (CDH1) based on spectral counting and assessment based on Western blot analysis.
