Sentence examples for based on similarity using from inspiring English sources
Annotations for ESTs are based on similarity using BLASTX or BLASTN [ 42] to sequences in one of six-public databases: Swiss-Prot, Human UniGene, Danio rerio UniGene, Oncorhynchus mykiss Unigene, Oryzias latipes Unigene, or GenBank NR.
The sequences were identified based on similarity using the Basic Local Alignment Search Tool BLASTT) program National Centre for Biotechnology Information (NCBI) online standard (http://www.ncbi.nlm.nih.gov/).nih.gov/
Transcripts across all species were pooled and clustered into groups based on similarity using the MCL algorithm [ 54, 55].
All unique sequences were annotated based on similarity using BLASTX or BLASTN [ 40] in the public databases GenBank NR and Unigene.
It can, thus, be summarized that the assignment of probable functions to novel proteins involved in aromatic degradation simply based on similarity using best hits leads to functional misannotations as phylogenetically different enzymes may show equal similarities to the query enzyme.
Several studies employing programs such as Cd-hit to cluster sequences based on similarity used a threshold of 95% similarity [ 7, 49].
25 The methods used for hybridization and scanning were consistent with those of Loor et al. 25 Annotation was based on similarity searches using BLASTN and TBLASTX against human and mouse UniGene databases and the human genome.
Each of these websites returns a list of predicted targets based on similarity calculations using molecular fingerprints (fps) or on docking scores.
The conventional approaches are based on similarity searching using the RepeatMasker program [ 17].
The annotation in Blast2GO is based on similarity searches using a statistical framework.
19 The array annotation was based on similarity searches using BLASTN and BLASTX 20 against human, mouse and pig UniGene databases, the human genome, and pig TIGR.
