Sentence examples for based on shotgun sequencing from inspiring English sources

We propose that the most effective SNP discovery strategy for the rat would be one based on shotgun sequencing of a single wild-derived sample and subsequent low-cost high-throughput genotyping of the resulting candidates in the laboratory strains of interest.

In these experiments, the composition of the gut microbiota was monitored over a one-year period using a culture-independent method based on shotgun sequencing of 16S rRNA clone libraries.

Our analysis is based on shotgun sequencing data of a HeLa cell line at moderate depth.

The published silkworm genome sequence represents one of the first attempts to sequence and assemble a lepidopteran genome mainly based on shotgun sequencing read data.

One of the individuals in this family group gave excellent results in a recent study based on shotgun sequencing and WGS [ 34].

We found that the microbiota composition of 16S rRNA gene sequences obtained using Sanger, 454 and SOLiD sequencing provide results comparable to the result based on shotgun sequencing.

To facilitate high-throughput characterization of genome structure based on shotgun sequence reads, we have developed an automated sequence read classification pipeline (SRCP).

Because Sanger BAC sequences were based on the shotgun sequencing method they had a negligible error rate.

Here we present (OryzaPG-DB) a rice proteome database based on shotgun proteogenomics.

The 16S rRNA surveys based on the shotgun sequencing method from 16S rRNA clone libraries allow full 16S rRNA sequence assembly and can determine the relative abundance of a bacterial phylum using the phylogeny reconstruction ARB tool [ 18].

The panel of anaerobic bacteria was chosen based on metagenomic shotgun sequencing data from our laboratory as they are frequently present in buffalo rumen metagenome samples.