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Green plant phylogeny based on shared gene clusters from 17 sequenced plant genomes.
Here we present a Java software CHSMiner that detects CHSs based on shared gene content alone.
CHSMiner defines CHSs based on shared gene content alone in order to fully exploit potential homology.
Based on shared gene families the extent of secondary intron loss can estimated.
Measuring the similarity of species based on shared gene content greatly underestimates their functional conservation.
Our results indicate that, in general, there is significant concordance between strain relationships established by MLST and those based on shared gene content as established by CGH.
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We also constructed a miRNA-miRNA network based on shared genes between any two miRNAs.
We thereby generated a list of disease-disease, drug-drug, and disease-drug pairs based on shared genes and/or enriched features.
In general, only small sets of overlapping genes are shared between each pair of E-MAPs (e.g. of the 552 genes in the RNA E-MAP, only 125 are also present in the Chromosome E-MAP) yet the correlation between them is high (≥ 0.5, see Table 2) allowing inferences based on shared genes to be exploited by our method.
We also note that a disease similarity network can be constructed based on shared disease gene [30], shared pathways [35], shared miRNA [36], shared protein complex [37], shared disease ontology [38] and disease comorbidity [39].
As in the case of Patient 5, these exceedingly rare cases of HISs are clonally related to the B-cell malignancy based on shared IGHV immunoglobulin gene rearrangements and additional shared mutations.
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based on shared mechanism
based on shared learning
based on shared hostility
based on shared insertion
based on shared key
based on shared anger
based on shared boundary
based on shared history
based on shared pursuit
based on shared responsibility
based on shared personality
based on shared enthusiasm
based on shared devout
based on shared humour
based on shared information
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