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Different from those constructions using complementary sequences as a kernel, the proposed constructions are based on sequences with periodic and aperiodic zero-correlation zone (PAZCZ).
The comparisons were based on sequences with high-quality annotations which most frequently come from densely sampled taxonomic groups.
Primers were designed for 1000 SNPs based on sequences with 50 bases on either side of a SNP.
Phylogenic tree for serine carboxypeptidases based on sequences with domain scores >150 was constructed and then compared for A. sojae NBRC4239, A. oryzae RIB40, A. flavus NRRL3357, A. fumigatus Af293, and A. nidulans FGSC A4 (Fig. 1).
Phylogenic tree for aspartic proteases based on sequences with domain scores of >150 was constructed and then compared for A. sojae NBRC4239, A. oryzae RIB40, A. flavus NRRL3357, A. fumigatus Af293, and A. nidulans FGSC A4 (Fig. 2).
These sequences are not present in the scatter plot shown in Figure 6B, which suggests that they are false positives because the plot in Figure 6B is based on sequences with undisputable experimental evidence (protein crystallization) and almost no dots are found on the right side of the line y = 3.33x − 130 (Fig. 6B).
Similar(54)
All assemblies were based on sequences from both strands with a minimum of two-fold coverage.
Daphnia genes annotated as candidates for iron ion homeostasis based on sequence conservation with Drosophila genes with known functions.
Gene Ontology terms were assigned to 17,902 assembled sequences based on sequence similarity with known proteins annotated with GO terms (UniProt-TrEMBL database).
Only 30% of the genes discovered were annotated based on sequence similarity with other species, among which only one group of (neuro peptide genes (pacifastin-like sequences).
Based on sequence similarity with known plant proteins, about 74% (19,861) genes matched with annotated coding genes.
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