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We determined AA interactions in Gag HIV-1 subtype C based on sequences and HLA type data obtained from 449 chronically-infected individuals.
For predicting novel pre-miRNA candidates, we used filters based on sequences and structure features to limit false positives, including GC content as well as minimum free energy of entire hairpins, and core hairpin structures.
Diagnostic reagents used in this country are based on sequences and antisera generated with BPI3Va, which may reduce detection of other genotypes.
In our system, the linear miRNA donor is based on sequences and structures derived from human miR-30a (Additional File 1) [ 9, 17, 28].
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Based on sequence and structural analysis, type one (PP1), type 2A (PP2and and type 2B (proteinrotein phosphatases are related enzymes and hence, are defined as the PPP family.
However, many are based on sequence and overall structural homology [17, 18], consequently often missing similarities when only local binding sites are conserved.
Presently, about 148 glycoside hydrolase families have been reported, based on sequence and structural similarities in the CAZy database (Lombard et al. 2014).
The above classification was based on sequence and structure similarity [35].
Based on sequence and structural criteria, type II topoisomerases are divided into two subclasses.
Ligands, receptors, signaling proteins, and transcription factors are grouped into protein families based on sequence and functional similarity.
In conclusion, we identified macaque CYP2C93, which is not orthologous to any human P450s, based on sequence and genome analysis.
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