Sentence examples for based on sequence overlap from inspiring English sources

Four tandem HMA4 repeats were identified in a contiguous sequence of 101,480 bp based on sequence overlap identities.

Based on sequence overlap, these assemblies were manually refined to obtain a single scaffold of each mt genome.

For clustering, ESTs were evaluated with MALIGN [ 23], a kmer-based alignment tool that clusters ESTs based on sequence overlap (kmer = 16, seed length requirement = 32, alignment ID >= 98%).

ESTs were clustered using Malign, a kmer based alignment tool that clusters ESTs based on sequence overlap (kmer  = 16, seed length requirement  = 32 alignment ID ≥98%).

The EST sequences were clustered into contig sets based on sequence overlap using the program Phrap [ 7].

For clustering, ESTs were evaluated with MALIGN, a k-mer based alignment tool (Chapman, Unpublished), which clusters ESTs based on sequence overlap (k-mer = 16, seed length requirement = 32, alignment ID ≥ 98%).

These sequences then were assembled into contigs based on sequence overlaps.

Based on sequence overlaps between these libraries we estimated that the total diversity of piRNA sequences in Ae. aegypti was within the same order of magnitude as the piRNA diversity of D. melanogaster.

As the existing hybrid methods mentioned above, BiMeta firstly performs a preprocessing phase which groups reads basing on sequence overlapping information, then it merges the read groups using features extracted from themselves.

Suk et al. [ 30] also used fosmid pool-based sequencing to assemble variants into haplotypes of approximately 1 Mb, up to a maximum length of 6.3 Mb; fosmids were tiled into contiguous molecular haplotype sequences based on sequence overlaps [ 31].

While a variety of sequencing strategies have been applied, the most common currently in use and the strategy chosen for the bovine genome relies mainly on whole genome shotgun (WGS) sequencing and assembly of the sequencing reads based on sequence similarity overlap.