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The primer sequences for the phlebovirus were based on sequence from Precarious Point virus and were forward 5' GGCAGATGATGGACAGTGG 3' and reverse 5' GTCTGAGGAAGGCAAGAAGG 3' (annealing temperature 55°C).
SNPs were selected based on sequence from individual founder colonies, and were tested only within the same founder colony.
Here we produce a Δ11 desaturase gene genealogy within ECB, based on sequence from the two putative functional genes found in Xue et al. [ 25].
Consequently, assignment of sequence haplotypes to individual sub-genomes can be attempted based on sequence from diploid progenitors, but only to a limited extent.
Based on sequence from the polymerase and capsid, 61 of these viruses (95%) closely clustered with genogroup II4 (≥90% similarity with prototype Lorsdale strain).
For RT-PCR of the FT-like gene, the primer-probe combination was designed by Applied Biosystems Custom Taqman(R) Gene Expression Assay Service based on sequence from the genomic clone: reverse primer GCTGGTCTTGGACTCTCATACC, forward primer GGTGACTGATATTCCAGCAACTACT, and probe TCTCTTGCCCATAGCTTG.
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The ~10,000 SNPs that were provided as part of the genotyping platform by Parallele Bio Sciences were discovered using the cattle genome project, based on sequences from only one or a few animals (information regarding their discovery is at ).
The alternative primer PLA491F was designed and has been tested to amplify all known algal plastids based on sequences from cultures [8], although it has one or more mismatches at the 5' end with several algal classes (Figure S1).
Therefore, this article presents a quantitative real-time RT-PCR assay based on sequences from Europe and Africa.
This improved method includes a pair of primers based on sequences from histidine decarboxylases from Gram-negative bacteria.
Several amplification reactions were performed with degenerative primers that were designed based on sequences from the orthologous genes available in other species.
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