Sentence examples for based on sequence distance from inspiring English sources

Phylogenetic trees were reconstructed by using the Neighbor-joining method based on sequence distance matrix, and the trees were displayed using the NJplot program (http://pbil.univ-lyon1.fr/software/njplot.html).html

Phylogenetic trees were constructed by the Neighbor-joining method based on sequence distance matrix, and the trees were drawn using NJplot [ 33].

Thus, the necklace model is not 3-dimensional, since it is based on sequence distances between residues rather than on their spatial distances.

Relationships among genes in modern plants can be inferred based on sequence similarity, phylogenetic distance, and syntenic SCBs.

Based on sequence similarity, phylogenetic distance and gene collinearity on the SCBs, we tracked the differential retention and expansion of ancestral extensin genes among four modern rosids.

Thus, our prediction formulas must model not only migration distance based on sequence properties, but also the effects of warping and distortion in the gel used to create the Master Profile.

Since the WxL domains of the CscB and CscC proteins can be distinguished based on sequence characteristics such as the distance between the conserved WxL residues, they were considered as two different families (WxL1 for the CscB proteins, WxL2 for the CscC proteins).

The data shown are obtained with distances based on sequence identity and pairwise deletion of gaps.

From the multiple sequence alignment (MSA) of the active sequences, we computed a matrix of pairwise distances, based on sequence identity.

Although values of LD based on sequence data decay at shorter distances than the values presented here [ 34], this analysis highlighted a general positive correlation between the level of LD over distance and the number of total and significant core haplotypes found.

Another approach that can provide information on polyphyletic species is based on sequence divergences and thresholds for these distances.