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Human TTP (hTTP) fragments bound to regions of 31 proteins that fell into 12 categories based on sequence characteristics.
After the discovery of additional neuropeptides with JH biosynthesis inhibiting activities in a variety of insect orders, 'allatostatins' were further classified in three distinct families (AST-A, B and C) based on sequence characteristics.
Based on sequence characteristics, dispersed TCAST-like elements were classified into two groups.
ShortRead data structures allow convenient manipulation of data, such as filtering reads based on sequence characteristics.
Consequently, the cut-off values were evaluated for Chlamydomonas based on sequence characteristics (Table 1).
However, they were based on sequence characteristics derived from known LTR retroelements.
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Many studies for identifying motifs have been based on sequence conservation or sequence characteristics, regardless of the biological processes.
Here we develop tools to improve the analysis of genetic redundancy by (1) creating a database of comparative information on gene pairs based on sequence and expression characteristics, and, (2) predicting genetic redundancy genome wide using machine learning trained with known cases of genetic redundancy.
miRNAs have been identified successfully from plant EST databases based on sequence conservation and characteristic miRNA features [ 15- 17].
The putative miR were then clustered based on sequence similarity into characteristic consensus sequences, where each member was required to match 14 consecutive bases to the most common member of the cluster.
Thompson BA, et al. A multifactorial likelihood model for MMR gene variant classification incorporating probabilities based on sequence bioinformatics and tumor characteristics: a report from the Colon Cancer Family Registry.
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