However, phylogenies based only on a selected molecular method do not necessarily have the same topology as trees made from morphological or biochemical data [ 33, 34].
I selected molecular markers based on a genomics study that used the Affymetrix Canine Mapping Array to genotype 61,435 SNP loci in hundreds of wild and domestic canids, including 14 northeastern and 3 Ohio coyotes.
Although the human GBMs were selected based on PTEN status, they were not selected based on their molecular subgroup status.
A trait of interest is selected based on DNA-based molecular markers co-segregated with or derived from portions of the gene that controls the trait rather than the trait itself.
100 models were generated and the best models for both B- and C- were selected based on the molecular probability density function (molpdf) which gives the current energy of each model.
To maximally represent the genetic diversity and wide geographic distribution, this panel of accessions was selected based on intensive molecular and phenotypic characterization, which reflect the major operational taxonomic units (OTUs) of soybeans in China [ 15].
These soybeans, representing wild and cultivars that mainly consist of landrace and modern elite accessions in East Asia, were selected based on intensive molecular and phenotypic analysis to maximally reflect the genetic diversity of soybeans (Additional file 1: Table S1).
Saccharina coriacea, S.angustata, Laminaria digitata, and Agarum clathratum (see Additional file 3) were used as outgroup taxa; they were selected based on previous molecular evidence of close relationship to S. japonica[ 1, 2, 11, 41- 43] and screening of nucleotide sequences available in GenBank.
A maximum-likelihood tree for each gene was created based on the selected evolutionary models with and without molecular clock and the Likelihood Ratio Test statistic was calculated.
Other successful studies resulted in molecular diagnosis of CaP, but they were only based on few selected, cancer-specific genes.
