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Gene linkage and clustering were identified based on scaffold coordinates.
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Thus, Acr-PGS scaffolds have demonstrated the ability to influence cellular organization based on scaffold structure.
The identified individual shotgun fragments were aligned onto their respective scaffolds, and distances were calculated based on scaffold lengths.
Based on scaffold 3, a panel of analogues was synthesized and tested for PvdQ inhibition activity.
Subsequently, shared markers were reincorporated based on their scaffold coordinates.
Chemical Abstracts Service (CAS) [39] offers a SubScape tool for visualisation and browsing based on scaffolds.
The O,N,O-moiety based on lutidine scaffold selectively coordinated to early transition metals such as titanium and niobium in the reaction with the corresponding metal alkoxides to form mononuclear complexes.
Based on the coordinates in genome scaffolds, the 71 genes were arranged and named PsBZPc01 to PsBZPc71 (since the transcription factor functions of the encoded proteins have not been experimentally confirmed, we termed them P. sojae bZIP candidates, PsBZPc).
Figure 2a shows the scaffold tree view with a user-defined sorting of the scaffolds based on some scaffold property, as well as a mapping of further properties to the node background color.
While Scaffold Hunter provides visualization based on the Scaffold Tree (as well as on hierarchical clustering), the scaffolds in Scaffold Explorer are defined interactively by the user at the time of performing the interactive analysis.
Location references solely based on geographical coordinates (e.g., WGS84 coordinates) also have severe problems.
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