Sentence examples for based on resequencing of from inspiring English sources

High-throughput SNP genotyping and estimation of recombination points based on resequencing of recombinant inbred lines were recently utilized, even though the sequencing coverage was insufficient (Huang et al. 2009; Xie et al. 2010).

In this study, we generated 200 recombinant inbred lines (RILs) from a cross between a resistant (Wonseadaesoo) and a susceptible (Junam) japonica variety using insertion/deletion (InDel) and tetra markers (Ye et al. 2001), which were developed based on resequencing of the two parental varieties, to identify new QTLs for bakanae disease resistance in rice.

(B ) Summary of genetic differences between N2 and JU1580 in a 155 kb region on chromosome IV (6,567,528-6,676,736) based on resequencing of JU1580.

This dataset consists of an extensive list of selective sweeps related to chicken domestication, based on resequencing of populations of RJF and a number of domesticated breeds.

Genetic assignment analysis based on resequencing of 18 loci in a sample of 25 to 45 wild barley individuals identified a primary geographic partition of samples into regions east and west of the Zagros Mountains (Morrell and Clegg 2007).

All SNPs in each unanchored scaffold were first called using the SUPER pipeline [ 51] based on resequencing data of SC, PS and the reference sequence of DHL92 generated from Illumina paired-end sequencing averaging 70*10 reads per sample at a read length of 150 bp and 22x coverage / 10Gb per sample [ 9].

In contrast, Zhang and Guo [ 57] estimated 0.042 SNPs/bp based on resequencing 6.8 kb of ESTs.

We have compared phylogenies and time estimates for Y-chromosomal lineages based on resequencing ∼9 Mb of DNA and applying the program GENETREE to similar analyses based on the more standard approach of genotyping 26 Y-SNPs plus 21 Y-STRs and applying the programs NETWORK and BATWING.

Estimates of diversity based on resequencing a more limited set of wild barley samples indicate moderately higher levels of diversity in the Western than in the Eastern wild barley populations (Morrell and Clegg 2007; Morrell et al. 2014).

SNPs were selected based on resequencing the coding exons of AR, ESR2, and CYP19 in a panel of 95 women from the Multi-Ethnic Cohort (19 each from African Americans, Latinos, Japanese, Americans, Native Hawaiians and Whites), with invasive, non-localized breast cancer.

Markers of RCZ16_DH were developed based on resequence data of the parents L144 and Z16.