Sentence examples for based on representative sequences from inspiring English sources

In this paper, we introduce and validate a fully automatic, whole-genome methodology based on "representative sequences".

Therefore we modified the input file for the FreClu program, setting all base quality scores of our SynEs sequences to the low Phred Score of 2. Further analysis or comparisons of the cluster composition amongst samples were based on representative sequences.

Phylogenetic trees were constructed using the MEGA 6.0 software program (Tamura et al. 2013), based on representative sequence for each OTU/aOTU, by neighbor-joining (NJ) method with bootstrap values calculated from 1000 replications.

Genotype-specific VE was assessed with the Cox proportional hazards model and score test as described by Prentice et al. (1978), and genotype-specific VE was calculated based on one representative sequence per individual.

Because the number of sequences in RNRdb far exceeds the number of informative sites in complete multiple sequence alignments, the analyses presented here are based on representative selections of sequences.

However, some conserved motifs within this new subfamily (see discussion) were identified and based on these one representative sequence (the castor bean cDNA sequence [GenBank: EG656577]) was selected.

Therefore, maintaining comprehensive phylogenies, based on representative and up-to-date molecular sequences, is challenging.

The procedure is based on representative oligonucleotide probes designed by analyzing Bgl II restriction fragments of the human genome sequence.

Protein sequence datasets were collected from Pfam version 27.0 (Finn et al., 2014) based on representative proteomes (Chen et al., 2011) at 75% co-membership threshold (RP75).

Illustrations are based on representative data.

Because many sequences were from related organisms, a smaller set of 54 NifD sequences based on representatives from each genus were examined.