Sentence examples for based on reference genome from inspiring English sources

Summary of maize transcriptomes assembled based on reference genome.

Furthermore, because complementary RNA probes are designed based on reference genome sequences, we were limited to find variants in comparison with the reference sequence.

When categorizing reads into RNA biotypes based on reference genome annotations, we saw that for both libraries, the majority of reads were aligning with rRNA and tRNA genes, in the sense orientation.

Most amplification products (69% for Asi1, 100% for Ceq1, and 75% for Ema2) were smaller than the size expected based on reference genome sequences (Additional file 2), indicating that those LCR segments were missing in the query genomes.

SNP calling proceeds as before, and parameters exist for both cstacks and sstacks to build Catalog loci and to match against those loci, respectively, based on reference genome alignment positions instead of sequence distance.

The approach involves assessing the absence or presence of genes from strains based on reference genome(s) fixed to microarray, followed by robust statistical algorithms to infer the evolutionary relationships between test strains that is usually represented as a phylogenetic tree [ 14- 18].

Variant detection methods can be evaluated using genome simulations based on reference genomes [ 15].

However, advancement in sequencing technology has also led to an escalation in the number of poor quality drafted genomes assembled based on reference genomes that can have highly divergent or haplotypic regions.

Based on reference genomes of those 15 bacterial species, we searched for the presence or absence of four genes potentially associated with the formation of gallstones: MDR, BSH, bG, and phL.

This analysis employed programs that offer rapid and robust orthology determination of novel, short sequences from plant ESTs based on reference seed plant genomes.

Tophat [ 41] was used for read alignment based on the reference genome annotation, genome sequence and paired end insertion information.