In this study, we investigated possible noncanonical interactions, potential inhibitors, and binding pockets in the main proteinase of SARS-CoV based on its recently determined crystal structure.
Based on the recently determined structures of T. rangeli sialidase (TrSA) and T. cruzi trans-sialidase (TcTS), we have now constructed mutants of TrSA with the aim of studing the relevant residues in transfer activity.
Based on the recently determined crystal structure of the nsP2 protease of CHIKV, this study identified potential inhibitors of the virus using structure-based approaches with a combination of molecular docking, virtual screening and molecular dynamics (MD) simulations.
Based on the recently determined crystal structure of the extracellular domain (ECD) of the mouse nAChR α1 subunit complexed with α-bungarotoxin at 1.94 Å resolution, we have constructed three-dimensional models of the ECD of the monomer, homodimer, and homopentamer of the human α7 nAChR and investigated in detail the interface between the two α7 subunits.
Homology models were built based on the recently determined crystal structure of the NatA complex from S. pombe (23).
Indeed, based on the recently determined structure of gsYqeH, the authors suggest that the GTP/GDP bound state modulates the relative three dimensional position of the C-terminal domain [19].
We analyzed the intron-exon boundaries of the laforin genes in each organism and determine, based on recently published reports describing rates of molecular evolution in Branchiostoma and Nematostella, that the conservation of laforin is linked to the molecular rate of evolution and the glucan metabolism of an organism.
Statistical assumption is based on recently published trials [ 14].
We performed homology modeling based on the most recently determined crystal structure of the XWnt8-Fz8-CRD complex [ 9] (pdb-code: 4F0A).
It proposes an automatically calculated threshold based on Otsu thresholding, based on empirically determined criteria.
