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Interestingly, we also found that in the most frequently encountered marine species (based on read recruitment [ 24], i.e. the genera Pelagibacter, Synechococcus, Prochlorococcus and Nitrosopumilus) there is a marked underrepresentation of certain detoxification systems.
When we exclusively examined the genomes of marine bacteria (61 species/strains fully sequenced; Figure 1), we found that the most common marine bacteria in the GOS data (based on read recruitment to genome reference sequences [ 24]), like Prochlorococcus and Synechococcus, have substantially fewer detoxification genes than the less common marine species.
Similar(58)
The method is based on read and verify.
Read coverage was computed and genome annotation was challenged based on read distribution and coverage.
Discordant scores based on reading errors were corrected.
Few methods to study AS based on read assembly exist.
Duplicate read counts were based on mapped reads with the same start and end point.
Configurable, based on quorum read and write requests.
All subsequent analyses were based on clean reads.
The final genome is based on 70,775 reads.
Note that the incorrect percentage is based on all reads.
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