Sentence examples for based on read information from inspiring English sources

Trinity does not rely on orthology but rather builds the transcriptome de novo based on read information alone.

Sequences were assembled using the Phusion assembler [ 18], based on read pair information.

Genomic DNA from Pa ATCC43949 was sequenced by a shotgun approach and sequences were assembled using the Phusion assembler [ 18], based on read pair information.

We also explored the accuracy of statistical tests based on read trees through a simulated analysis using Fast UniFrac [ 18], which measures distance between communities using phylogenetic information.

The method is based on read and verify.

"Butterfly" processed the individual graphs in parallel, tracing the paths based on reads and pair-end information, ultimately reporting full-length transcripts for alternatively spliced isoforms.

The keywords were assigned based on reading the literature relevant for each operon, and the information provided in EcoCyc (Keseler et al., 2013).

Output clusters from the contig-graphing approach were used to group NEWBLER-generated contigs based on read-assembly information (see methods and Additional file 3 for a complete description).

This method works solely based on the NGS read information with a remarkable accuracy of over 99% even at the strain-level identification, where the difference between the genomes gets to the minimal; thus, making it difficult to discriminate.

The resultant contigs were then joined into scaffolds based on read-pair associations and order information from the shotgun clones.

TopHat initially removes a portion of reads based on quality information accompanying each read, then maps reads to the reference genome.