Sentence examples for based on read depth from inspiring English sources

Performance thresholds were established based on read depth ≥500X and heterozygote allele balance within ±10% deviation from 50 50, which was observed for 426 out of 451 SNPs.

Coverage depth statistics were tabulated using in-house PERL scripts and based on read depth values obtained from diBayes output files (*ConsensusCalls.txt).txt

For example, a user can choose to filter variants based on read depth or sequencing quality.

Chromosomal rearrangements were investigated through 4 independent analyses based on read depth, copy number variation, pair-end reads and PCR.

The latter allows user-specified masking of contig positions based on read depth and base call proportion.

Since the inference in THetA is based on read depth alone, there can be several equivalent copy-number profiles explaining the data.

I will present methods based on read-depth, split-read, and paired-end sequence approaches from both whole genome and exome sequence datasets and compare these to the utility of standard microarray approaches applied in the clinic.

Binomial tests based on read-depth and reproducibility between libraries were performed to find out the TSSs or TTSs that were statistically reliable.

Our approach will be to focus on structural variation in protein-coding sequence of all 4,000 individuals using a combination of algorithms based on read-depth and split-read analyses.

Accessible and inaccessible chromatin regions were identified based on the read depth on the heterozygous SNPs.

Therefore, the chromatin state (accessible or inaccessible) can be determined based on the read depth on heterozygous SNPs.