Sentence examples for based on read density from inspiring English sources

MCRs detection is based on read density and is therefore less sensitive to mis-assemblies in the reference genome.

To calculate the genomic copy number of a single cell, the sequence reads are grouped into intervals or 'bins' across the genome, providing a measure of copy number based on read density in each of 50,000 bins, resulting in a resolution of 50 kb across the genome.

Based on read coverage and SNP density, we identified 875 potential sex-chromosomal scaffolds with a total length of 19.5 Mb, comparable to the B. mori Z chromosome (20.35 Mb) (Arunkumar et al. 2009) (supplementary file S2, Supplementary Material online).

After assembly, the mean density of SNPs across the four parental haplotypes in assembled regions was estimated based on read re-alignments to be 7.6 per thousand bases.

The latter is calculated based on the read density of segment i (defined in Equation (1)) over all F samples.

Three control gene sets were created of a similar size to the blanketed gene list: active genes (based on H3K4me3 read density at the promoter), active genes with no H3Y41ph, and genes with H3Y41ph in the promoter but not across the gene body.

The method is based on read and verify.

Discordant scores based on reading errors were corrected.

Few methods to study AS based on read assembly exist.

Second, SUGAR generates high resolution heatmaps showing spatial distributions of base quality, read density, and mapping quality scores on the flowcell.

Putative uORF translation with noted initiation codon is also identified based on areas of increased read density for DDIT4 (REDD1), PPP1R15B, and TXNIP (see detailed sequence information in Figure 3 figure supplement 2 ).