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Last, regions are classified to allele-specific or non-specific methylated regions, based on read assignments and the predicted methylation levels from the previous step.
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Assignments will include weekly reflections on reading assignments and a steadily developed final project.
The course grade will be based on homework and reading assignments worth 50% in total, a midterm worth 20%, and a final exam worth 30% of the final grade.
Based on single-read assignments, the most prevalent bacterial taxa at the phylum level are Firmicutes (39.0% of hit-reads), followed by Proteobacteria (17.3% of hit-reads) and Bacteroidetes (7.0% of hit-reads), which are responsible for biomass degradation and fermentation.
5′ UTR read assignments were based on canonical transcript splice isoform as in hg19.
Who would read assignments on lockdown, in solitary confinement, on their job assignments and anywhere they could find the time and space to read.
Significantly identified genes, which have read assignments above the threshold set, were determined by ranking the genes based on the number of read assignments, followed by selecting the top ranking genes that captured 95% of the assigned reads.
Additional file 1: Table S3 presents a summary of CLARK's assignment of barley BACs (assemblies) to arms (assemblies), while Table 5 refers to the same assignments based on the reads instead of the assemblies ("R2R" assignment).
Functional COG distribution profiles were generated based on the reads abundance for total and genus specific COG assignment.
Two genera, Streptococcus and Fusobacterium, were frequently identified based on our taxonomy assignments of the reads.
We have compared the assignment of the three available PPII assignment methods and specifically analyzed the distribution of PPII based on these assignments.
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