Suggestions(4)
Exact(4)
Notably, comparisons based on raw counts (unadjusted for potential differences in detectability) produced somewhat different results.
This confirms our earlier conclusion (Fig. 4), based on raw counts, that text enders are more strictly defined than text beginners.
However, there are many variations on the approaches, and, as discussed earlier, methods based on model residuals have a different goal than methods based on raw counts.
In contrast to classic information content [ 94], DIC is based on raw counts (instead of per-column nucleotide probabilities, which can be inaccurate for a small set of aligned sequences).
Similar(56)
There was no need for attenuation correction of the dynamic study because the factors that respectively relate gradient and intercept based on raw count rates to Ki and V 0) are identical, and cancel out in their ratio, as previously proven [29].
BLM gene counts were based on raw count data quantified using HTSeqCounts [ 40] based on a variety of genome and transcriptome references [ 42– 45] after mapping reads to the genome with Tophat [ 46].
For example, the edgeR and DEGSeq methods were specifically incorporated for gene expression profiles based on raw read counts.
We next calculated gain/loss statistics based on raw cell count data and based on tree edges, as we did with the CC data.
Genes with at least one read per sample and at least 20 total reads across all samples were chosen based on raw gene read counts from CLC mapping.
Our analysis suggests that counts based on raw short read data increase linearly with the sample size because of increased sequencing depth.
Read counts in this table are based on raw reads and refer to the Bowtie mapping used by miRDeep2.
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Justyna Jupowicz-Kozak
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