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We correlate these groups with different localization studies [ 19, 21, 30] based on proteins from each of these groups.
Due to the paucity of devil specific protein and cDNA evidence, the majority of the gene models were based on proteins from other species.
Focus genes are based on proteins from our datasets that are mapped to corresponding gene objects in the Ingenuity Pathways Knowledgebase (IPKB) and are known to interact with other genes based on published, peer reviewed content in the IPKB.
Other variants of this classical approach include building phylogenetic trees to infer protein functions based on proteins from the same subfamily (Engelhardt et al., 2005; Krishnamurthy et al., 2007).
4. Similarity Stage: Generating Additional Coding Models Using Proteins from Related Species Due to the paucity of devil specific protein and cDNA evidence, the majority of the gene models were based on proteins from other species.
At the last part of the paper, we compare the prediction performance of ION with that of other seven centrality methods (DC, BC, CC, SC, EC, IC and NC), based on proteins from E. coli K-12 (E. coli).
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In the present study, FCoV-specific antibodies detected by IFA based on proteins derived from a local FCoV isolate revealed a seroprevalence of 34.5%.
The best matches (e-value ≤ 10-4) were compared with the UCSC genome browser 'known gene' annotation (hg18), which is based on protein data from UniProt and mRNA data from the NCBI RefSeq collection and GenBank.
The UCSC Known Genes dataset is based on protein data from Swiss-Prot/TrEMBL (UniProt) and the associated mRNA data from GenBank, and serves as a foundation for the UCSC Genome Browser.
Tissue specificity information was primarily based on protein abundance from the online database.
With the exception of minicollagens, each gene family analysis was based on protein sequences from deuterostome (human) and cnidarian (N. vectensis; E. lineata) lineages.
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