Sentence examples for based on protein probability from inspiring English sources

Based on protein probability, Rv2744c remained the top scoring protein (Table 1).

This prediction is firmly based on protein interactions (the latent variable for the group of protein interactions has a probability of 0.99) with the nucleolar GTP-binding protein 1 (NOG1) and the FHA domain-interacting nucleolar phosphoprotein MKI67.

Identifications were filtered based on 95% peptide probability and 80% protein probability for PeptideProphet [ 14] and ProteinProphet [ 15], respectively.

To summarize the obtained results (Fig. 2), we have binned the encoded proteins based on the assigned probability values for each protein, such that, if more than 50% of the nearest neighbors of the protein belong to a given compartment, that protein is assigned to a single compartment as its primary localization site.

Since prediction in the first step is based on probability of a protein p having term t, terms with probabilities above certain threshold can be treated as positive prediction and terms below the specified threshold can be treated as the negative prediction; thus, sensitivity and specificity measures can be calculated.

Protein identification was based on the probability based MOWSE (MOlecular Weight SEarch) Score (p < 0.05) and % coverage of peptide [ 47].

PID provides the p-value based on the probability of occurrence of the proteins in the defined pathway.

We have considered alignments based on class probability vectors where the original descriptors came from protein sequence (Bernoulli distributions) or structure (Gaussian distributions).

SIFT predicts how a substitution affects protein function, based on the scaled probability, by comparing the SIFT score to the threshold value given by user.

Low probability enabled potentially significant protein identifications based on many moderate-probability peptides, but no such proteins emerged; instead nearly all identifications were based on peptides with individual confidences >80% (Table S1).

The proteins identified based on probability-based scoring and spectra are summarized in Table 1 and Supplementary Figure S2.