Sentence examples for based on protein alignments from inspiring English sources

Alignments of nucleotide sequences were constructed by PAL2NAL [ 112] based on protein alignments.

DNA alignments were obtained using DNA sequences, based on protein alignments for the gene families.

DNA sequence alignments were based on protein alignments using the Transalign program (Bininda-Emonds 2005).

This pattern is consistent with a tree based on protein alignments of the ten Rickettsia genomes [ 41].

Genome annotation for both is primarily based on protein alignments coupled with ab initio, as there is minimal same-species transcript data available.

Transcript data for cox3 from three species (K. brevis, K. micrum and G. polyedra) and cox1 from K. micrum are all apparently full length based on protein alignments and all lack an AUG in the terminal region.

The codeml program of the PAML software package was used to detect positive selection in the CYP71C subfamily [ 39]. cDNA sequences were aligned based on protein alignment by using the RevTrans 1.4 server [ 40].

Human Mbd3 and mouse Mbd3 exhibit 95.8% identity at the amino acid level based on protein alignment.

For each transcription factor family, a phylogenetic tree was constructed based on protein alignment generated with the neighbor-joining method using ClustalW.

Based on protein alignment, a sub-group of bovSERPINA3 could be distinguished.

Furthermore, we also describe a new barhl paralog in medaka which, based on protein alignment, could be assigned to the Barhl2 group.