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Different expression level of GS5 based on promoter sequences is associated with grain width (Li et al. 2011).
To address whether the promoters of bioinformatically determined target genes can be bound by the WRKY53 protein, and also whether binding specificity is conserved across cereals, we designed DNA probes based on promoter sequences of three coregulated rice genes (Tables 3 and 4).
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A new method was developed based on promoter sequence analysis of differentially expressed genes.
The classifier was trained using values based on the promoter sequences of contractile, energy, and translation module depicted in Figure 6 (high co-expression), and 150 of promoters with a Pearson correlation lower than 0 (low co-expression).
Primers for the pyrosequencing were designed based on the promoter sequences of VEGF (GenBank Accession Number M63971), FLT1 (Accession Number D64016), and KDR (Accession Number X89776), shown in Fig. 1a [ 4].
The regulatory DNA motifs were identified based on the promoter sequences of the predicted tissue-specific genes, and the candidate transcription factors were previously shown to regulate the specialized functions in particular tissues.
As this evidence is based on human promoter sequences, these genes may be regulated by NF κB during cellular responses to Salmonella in other species as well, including human.
No potential CRP sites were identified by sequence analysis in the LEE5 and LEE4 promoter regions based on the promoter sequence data published [48], [49].
Based on the promoter sequence features, these promoter patterns seem to be complementary with ATCG-middle promoters.
Based on the promoter sequence, primer was designed and the genomic fragment comprising the promoter and its corresponding gene was amplified and cloned.
Based on the promoter sequence comparison between human and mouse for the 6,901 genes, we investigated the relationship between gene function and promoter conservation.
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