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Formins from angiosperms can be unequivocally assigned to one out of two classes, based on primary structure of their FH2 domains [ 7, 8]; none of them is orthologous to any of the proposed seven metazoan formin classes [ 6], or to fungal formins.
We have calculated three different types of Cis: two based on primary structure conservation, CiUniv and Ci1ry; one based on secondary structure conservation, Ci2ry; and a composite Ci which combined the information obtained from the other three, CiTot.
Based on primary structure, WRKY proteins have been classified into three groups (I, II, and III) and various subgroups (e.g., IIa, IIb, etc).. Recent studies have shown that WRKY transcription factors are involved in various biological processes but most notably respond to biotic and abiotic stresses (Pandey and Somssich 2009).
The PI3K protein family is divided into three classes and several subclasses based on primary structure, regulation, and in vitro lipid substrate specificity.
We classified the purified enzymes into GH families based on primary structure and demonstrated that Cel7A, Cel6A, Cel5A, Xyl10A, and Bgl3A play important roles in the synergistic hydrolysis of PCS glucan.
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The actin-binding proteins are grouped into 60 distinct classes based on primary structures [35].
In this paper a method to determine the optimum bitumen content for given foamed bitumen mix based on primary aggregate structure porosity and indirect tensile strength criterion is proposed.
The works are generally less evocative in the next section, which is devoted to abstraction based on primary geometric structures.
Preliminary phylogenetic analyses have classified these homologous SDHs into two groups based on primary protein structures [ 10, 29, 33, 40].
Based on primary and secondary structure information, phylogenetic relationships were reconstructed by Profile Neighbor-Joining (PNJ) [72], through the use of an ITS2 sequence-structure-specific, General Time Reversible (GTR) substitution model, in ProfDistS v0.9.8 [74], [75], [75].
We clustered InterGenic Regions (IGRs) based on primary and secondary structure features, and sequence conservation in other thermococcal genomes.
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