Sentence examples for based on predicted TSSs from inspiring English sources

First, the model searched for BDGPs based on predicted TSSs.

This approach had a potential defect in that we cloned the intergenic regions as putative BD PROs based on the predicted TSSs.

The 5' ends of pri-miRNAs are annotated based on the mappings of predicted TSS, CpG islands and 5' CAGE tags to the upstream flanking regions.

We cloned nine putative BD PROs based on the MA data set using the predicted TSSs.

The DragonGSF program predicts gene promoters based on information of CpG islands, TSSs and downstream signals of predicted TSSs [ 13].

Worksheet 4 (Sig_Pred vs. confirmed TSSs)) – Distance between significant predicted TSSs, with read number based statistical tests, and known TSSs.

On average, 73.12% of our predicted TSSs in each sample are located within the [-50 nt, 50 nt] interval around a TSS determined by dRNA-seq (Additional file 1: Table S6).

These 314 TSSs are 4.2 kb away from their corresponding translational start sites on average (range 200 bp - 24 kb, standard deviation 3.2 kb). Figure 1A shows that repeat content drops dramatically approaching the predicted TSSs; fewer than 2% of bases in the last 200 bp before these TSSs are recognized by RepeatMasker as repetitive elements.

The remaining 1,968 predicted TSSs appeared only in one sample.

Indeed, TSS annotations based on small numbers of reads appeared unreliable (24% of congruence), whereas TSSs covered by >50 sequencing reads were found to match more frequently the experimentally determined or in silico predicted TSSs (82 and 77%, respectively).

Worksheet 3 (Predicted vs. confirmed TSSs) – Distance between all predicted TSSs and known TSSs.