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Plant defensins are divided into two classes based on precursor proteins predicted from cDNA clones [ 1, 3].
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The SCAmpPs cyclic peptide products in Figure 2 are assigned based on precursor protein similarity to previously identified cyclic products [ 8, 9].
It supports relative protein quantification based on precursor ion intensities, including element labels (N), residue labels (SILAC and ICAT), termini labels (O), functional group labels (mTRAQ), and label-free intensity approaches.
MaRiMba creates transition lists from spectral libraries, restricts the output to specified proteins or peptides, and filters the information based on precursor peptide and product ion properties.
Absolute protein copy numbers have recently been reported based on precursor ion currents (Schwanhäusser et al. 2011), rather than spectral counts.
Notably, analytical precision remained adequately high even for quantification based on precursor ions of low intensity.
Based on precursor sequences, these 296 miRNAs were classified into 49 miRNA families.
Classification studies, based on the precursor protein structure, grouped Vv-AMP1 with Class I of the defensin family [ 8].
Based on the precursor protein structure, PgD5 groups with Class I of the defensin family [ 2], containing an N-terminal signal peptide followed by the mature defensin domain.
We determined the miR* region for each precursor sequence separately based on the precursor's secondary structure.
a, Phylogenetic placement of corallicolids, based on mitochondria-encoded proteins.
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