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In molecular breeding for rice blast resistance, markers developed based on polymorphisms between functional and non-functional alleles of resistance genes, can provide precise and accurate selection of resistant genotypes without the need for difficult, laborious and time-consuming phenotyping.
However, psbO is a tandem repeat gene, and is present at a relatively high copy number based on polymorphisms between different EST and cDNA copies, but is intron rich.
DNA microarrays have been used for genetic mapping studies based on polymorphisms between parental genotypes [ 1].
InDel markers were created based on polymorphisms between these two ecotypes to meet the demands of researchers.
KASP™ markers were designed based on polymorphisms between Sahara 3771 and B intolerant cultivars at the B tolerance loci HvBot1, HvBot2 and HvNIP2 1 (Additional file 4: Table S2).
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The markers were selected based on polymorphism between IR64 and N22 and also linked to QTLs of different agronomic traits.
Common marker in this study refers to markers based on polymorphisms found in the orthologous sequences between and lily and tulip (although the specific polymorphism may differ between the two species), and thus their mapping position can be used to study synteny between the two species.
Design of the Illumina Infinium 6 K SNP chip for rice, referred to as the Cornell_6K_Array_Infinium_Rice (C6AIR), includes 4429 SNPs from re-sequencing data and 1571 SNP markers from previous BeadXpress 384-SNP sets, selected based on polymorphism rate and allele frequency within and between target germplasm groups.
These enzymes show phenotypic variability based on polymorphism, suggesting sorafnib metabolism may be related with polymorphisms of the above enzymes, though the polymorphism in the present case were unexamined.
Our analyses were based on polymorphism at nine inter-simple sequence repeat (ISSR) loci.
A typical approach is as follows: 1) pick candidate regions for study based on levels of divergence between reference genome sequences, and then 2) attempt to infer causes of evolution based on polymorphism data from those candidate regions.
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