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a PCA based on phylum level; b PCA based on genus level; c PCA based on total OTUs; d Cluster analysis based on bray curtis.
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We divided the predicted proteomes into 31 divisions based on phylum (table 1).
****Analysis only allows identification on phylum level.
One conclusion of the presented analysis of the guinea pig metagenome is that on phylum level, it has big similarities to the human metagenome.
AOA was initially classified into the phylum Crenarchaeota (Könneke et al. 2005) and later into the newly proposed phylum Thaumarchaeota based on genomic level comparison (Brochier-Armanet et al. 2008; Pester et al. 2011).
Based on genomic level comparison, AOA was classified into the newly proposed phylum Thaumarchaeota (Brochier-Armanet et al. 2008; Pester et al. 2011).
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Based on each phylum's relative OTUs abundance, the taxonomical survey at the diversity level (see Fig. 5) revealed that the Proteobacteria were prevalent among the disturbed communities.
Based on each phylum's relative sequences abundance, the taxonomical survey at the structure level (see Fig. 6) revealed that the Proteobacteria are dominant among disturbed communities (Lar = 97.94% > Bar = 98.21% > Tur =92.53% > Opa = 70.86% > Das = 61.16%).
PCA was performed based on normalized phylum counts.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com