Sentence examples for based on phylogenetic tree from inspiring English sources

We utilized an explicit evolutionary method of HGT detection based on phylogenetic tree reconstructions and reconciliations to detect HGT16.

Based on phylogenetic tree (Figure 4), we found that the endo-arabinanase AbnZ2 was cluster closer with the arabinanase from Bacillus subtills (P42293.2).

On the other hand, Shewanella xiamenensis, which is isolated from coastal sediment collected off Xiamen, China, is a close-related strain to S. oneidensis based on phylogenetic tree analysis by 16S rRNA and gyrase gene (Huang et al. 2010).

Based on phylogenetic tree reconstruction of NIm-1A sequences, the 79 clinical isolates were assigned to 24 different serotypes with highly significant bootstrap values (77 100%, Table 1).

Based on phylogenetic tree reconstructions, several monophyletic clades were detected, corresponding to genera, species and subspecies.

Based on phylogenetic tree reconstructions, we distinguish either seven or nine major mtDNA clades.

The tree topology based on pair-wise Fst-values was largely confirmed with UniFrac-based clustering of countries calculated based on phylogenetic trees using nucleic-acid and deduced amino-acid sequences.

Recently, visualization and inference methods based on phylogenetic trees have been developed [26] [28].

As noted above, phylogeny-based methods all exhibit a very low FP error rate, because of the stringent criteria used to predict orthology based on phylogenetic trees.

Based on phylogenetic trees and calculate synonymous substitutions/site/year, we propose that REM IX from Arabidopsis and REM XIII from rice suffered later genome duplication events originating a new species-specific REM class.

However, previous studies showed that is not possible to distinguish Brazilian isolates with the GWGR motif from those with GPGR based on phylogenetic trees from the V3 loop sequence [10], [14], [17].