Sentence examples for based on phylogenetic clustering from inspiring English sources
The OXLPs are divided into three groups based on phylogenetic clustering (Fig. 1), but all three groups are under purifying selection (ω = 0.1397 0.2072 and 0.1273).
Isolates could be identified as belonging to K. pneumoniae sensu stricto, i.e., phylogenetic group KpI [40], based on phylogenetic clustering of the seven MLST genes and gyrA [40], using KpII-A, KpII-B [57], KpIII [40] and K. oxytoca, K. planticola and K. terrigena isolates for comparison.
We have changed the text to remove implications of shared function based on phylogenetic clustering.
Therefore, we propose a more comprehensive classification of A1 APs based on phylogenetic clustering.
Therefore, based on phylogenetic and physical clustering the DUF71 proteins were split into: the Dph6 and the DUF71-B12 subgroups that were annotated as such and captured in the "Diphthamide biosynthesis" and "Duf71-B12" subsystems in the SEED database.
This annotation is based on phylogenetic analyses of clusters of homologous sequences corresponding to the longest transcript of each gene.
The closely related subfamilies of OR genes based on phylogenetic analysis were clustered together, and the full-length protein sequences were aligned using ClustalW.
Species show no clustering based on phylogenetic relationships, indicating that species are sufficiently diverged from one another (≥25 Myr) that their TE landscapes retain no pattern of shared ancestry.
Based on phylogenetic analysis of A-domains, cluster synteny with the equisetin cluster [ 58], and sequence homology, this study identifies the putative ophiosetin synthetase cluster around the hybrid NRPS-PKS, TOPH_07403 (Additional file 1).
Analysis of sample clustering based on phylogenetic distance metrics yielded similar results (weighed UNIFRAC p > 0.05 and unweighted UNIFRAC p = 0.022).
In medaka fish (Oryzias latipes), only one barhl has been described so far (olbarhl); based on phylogenetic analysis olbarhl has been clustered to the barhl1 group of paralogs [ 6, 12, 14].
